Haplogroup L5a1c is a branch on the maternal tree of humanity.
mtDNA Haplogroup L5a1c Phylotree History
Phylotree.org is the maternal (mtDNA) tree of humanity. It is maintained by Dr. Mannis Van Oven. Each build is a major update to the tree. The current build is #17.
|01||L5a1c||513 4137 12303 13752A||Released 27 Aug 2008|
|02||L5a1c||513 4137 12303 13752A||Released 14 Oct 2008|
|03||L5a1c||513 4137 12303 13752A||Released 1 Mar 2009|
|04||L5a1c||513-514d 4137 12303 13752A||Released 10 May 2009|
|05||L5a1c||513-514d 4137 12303 13752A||Released 8 Jul 2009|
|06||L5a1c||513 4137 12303 13752A||Released 28 Sep 2009|
|07||L5a1c||513 4137 12303 13752A||Released 10 Nov 2009|
|08||L5a1c||513 4137 12303 13752A||Released 21 Mar 2010|
|09||L5a1c||513 4137 12303 13752A||Released 20 Jun 2010|
|10||L5a1c||513 4137 12303 13752A||Released 10 Aug 2010|
|11||L5a1c||513 4137 12303 13752A||Released 7 Feb 2011|
|12||L5a1c||513 4137 12303 13752A||Released 20 Jul 2011|
|13||L5a1c||513 4137 12303 13752A||Released 28 Dec 2011; Last Build to use the rCRS|
|14||L5a1c||G513A C4137T C12303T T13752a||Released 5 Apr 2012; First version to use the RSRS|
|15||L5a1c||G513A C4137T C12303T T13752a||Released 30 Sep 2012|
|16||L5a1c||G513A C4137T||Released 19 Feb 2014|
|17||L5a1c||G513A C4137T||Released 18 Feb 2016|
mtDNA Haplogroup L5a1c Data Sources
GenBank is a database of genetic sequence data. It is run by the United States National Institute of Health. It serves as the main repository for mtDNA full sequence profiles. Samples come both from published academic literature and donations from genetic genealogy community members. In addition to GenBank samples, listings below may include other samples published but not submitted to GenBank such as those from the HapMap project.
Note: GenBank results currently use Phylotree build 16. I am working on changing resuts over to build 17.
|Hg ID||Publication||Missing Variants||Additional Variants|
|Hap5000300||Batini et al., 2011||none||L5a1c:455.1TT, 523-524d, 5978, 12303, 12780, 13752A, 16187, 16519|
|Hap5000305||Batini et al., 2011||L5a1c:9329||L5a1c:455.1TT, 523-524d, 12303, 13105, 13752A, 16187, 16519|
|Hap5000306||Batini et al., 2011||none||L5a1c:455.1TT, 523-524d, 7960, 12303, 13752A, 15929, 16183d, 16186, 16188, 16519|
|Hap5011020||Kivisild et al., 2006||L5a1c:146, 182, 7424, 16148, 16166, 16230, 16355, 16362||L5a1c:1-435d, 455.1TT, 523-524d, 8856, 11770, 12303, 13105, 13752A, 16022-16569d|
|Hap5011021||Kivisild et al., 2006||L5a1c:146, 182, 16148, 16166, 16230, 16355, 16362||L5a1c:1-435d, 455.1TT, 523-524d, 1850, 5978, 12303, 12780, 13752A, 16022-16569d|
|Hap5023379||Zheng et al., 2012||none||L5a1c:151, 455.1TT, 523-524d, 6527, 10006, 12873, 16093N, 16183d, 16519|
Geno 2.0 Data
Data from Geno 2.0 is derived from the The National Geographic Society’s Genographic Project — the DAR. The Hg ID is specific to this site and is used to protect the identities of those who take part in Genographic research. Birth Country, Mother's Birth Country, and Maternal Grandmother's Birth Country have been normalized from DAR database fields. The Maternal Origin is determined based on the three previous fields.
Note: Geno 2.0 results currently use Phylotree build 16. I am working on changing resuts over to build 17.
If you use the information in this table, please credit both this site and The National Geographic Society’s Genographic Project.
Sources & Resources
- Batini, Chiara; Lopes, Joao; Behar, Doron M.; Calafell, Francesc; Jorde, Lynn B.; van der Veen, Lolke; Quintana-Murci, Lluis; Spedini, Gabriella; Destro-Bisol, Giovanni & Comas, David (2011). Insights into the Demographic History of African Pygmies from Complete Mitochondrial Genomes. Molecular Biology and Evolution, 28(2), 1099-1110.
- Behar, D.M., van Oven, M., Rosset, S., Metspalu, M., Loogväli, E.L., Silva, N.M., Kivisild, T., Torroni, A. and Villems, R. (2012). A “Copernican” reassessment of the human mitochondrial DNA tree from its root. American journal of human genetics, 90(4), 675-684.
- Fan, L., & Yao, Y. G. (2011). MitoTool: a web server for the analysis and retrieval of human mitochondrial DNA sequence variations. Mitochondrion, 11(2), 351-356.
- Fan, L., & Yao, Y. G. (2013). An update to MitoTool: using a new scoring system for faster mtDNA haplogroup determination. Mitochondrion, 13(4), 360-363.
- Kivisild, Toomas; Shen, Peidong; Wall, Dennis P.; Do, Bao; Sung, Raphael; Davis, Karen; Passarino, Giuseppe; Underhill, Peter A.; Scharfe, Curt; Torroni, Antonio; Scozzari, Rosaria; Modiano, David; Coppa, Alfredo; de Knijff, Peter; Feldman, Marcus; Cavall (2006). The Role of Selection in the Evolution of Human Mitochondrial Genomes. Genetics, 172(1), 373-387.
- Van Oven, M., & Kayser, M. (2009). Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation. Human mutation, 30(2), E386-E394.
- Zheng, H. X., Yan, S., Qin, Z. D., & Jin, L. (2012). MtDNA analysis of global populations support that major population expansions began before Neolithic Time. Nature Scientific Reports, 2, -.
- Ian Logan's mtDNA Pages
- Ian Logan's Instructions for mtGenome Genbank Donation
- James Lick's mtDNA Utility
- The FTDNA Haplogroup Project for Haplogroup L5
- The Wikipedia Article for Haplogroup L5
The following members of the community offer paid consulting for those seeking help with mtDNA results. Inclusion on this list is not a recommendation or endorsement of any service.
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Last Updated: Last updated: November 30, -0001 at 0:00 am