Haplogroup X3a is a branch on the maternal tree of human kind. The woman who started this branch lived at some point between recent generations and 6,200 years ago (Behar et al., 2012b).
mtDNA Haplogroup X3a Phylotree History
Phylotree.org is the maternal (mtDNA) tree of humanity. It is maintained by Dr. Mannis Van Oven. Each build is a major update to the tree. The current build is #17.
|05||X1b1||256 5420 11020 16126||Released 8 Jul 2009|
|06||X1b1||256 5420 11020 16126||Released 28 Sep 2009|
|07||X1b1||256 5420 11020 16126||Released 10 Nov 2009|
|08||X1b1||256 5420 11020 16126||Released 21 Mar 2010|
|09||X1b1||256 5420 11020 16126||Released 20 Jun 2010|
|10||X1b1||256 5420 11020 16126||Released 10 Aug 2010|
|11||X3a||256 5420 11020 16126||Released 7 Feb 2011|
|12||X3a||256 5420 11020 16126||Released 20 Jul 2011|
|13||X3a||256 5420 11020 16126||Released 28 Dec 2011; Last Build to use the rCRS|
|14||X3a||C256T T5420C A11020G T16126C||Released 5 Apr 2012; First version to use the RSRS|
|15||X3a||C256T||Released 30 Sep 2012|
|16||X3a||C256T||Released 19 Feb 2014|
|17||X3a||C256T||Released 18 Feb 2016|
mtDNA Haplogroup X3a Data Sources
GenBank is a database of genetic sequence data. It is run by the United States National Institute of Health. It serves as the main repository for mtDNA full sequence profiles. Samples come both from published academic literature and donations from genetic genealogy community members. In addition to GenBank samples, listings below may include other samples published but not submitted to GenBank such as those from the HapMap project.
Note: GenBank results currently use Phylotree build 16. I am working on changing resuts over to build 17.
|Hg ID||Publication||Missing Variants||Additional Variants|
|Hap5008766||Fernandes et al., 2012||none||X3a:309.1C, 315.1C, 16183C|
|Hap5013117||Raule et al., 2014||none||X3a:309.1C, 315.1C, 8937, 8967, 10187, 16183C|
|Hap5014256||Shlush et al., 2008||none||X3a:309.1C, 315.1C, 5420, 11020, 16126, 16183C|
|Hap5014258||Shlush et al., 2008||X3a:195||X3a:309.1C, 315.1C, 5420, 11020, 16126, 16183C|
|Hap5023683||Reidla et al., 2003||none||X3a:309.1CC, 315.1C, 4907, 5420, 11020, 16126, 16183C|
Geno 2.0 Data
Data from Geno 2.0 is derived from the The National Geographic Society’s Genographic Project — the DAR. The Hg ID is specific to this site and is used to protect the identities of those who take part in Genographic research. Birth Country, Mother's Birth Country, and Maternal Grandmother's Birth Country have been normalized from DAR database fields. The Maternal Origin is determined based on the three previous fields.
Note: Geno 2.0 results currently use Phylotree build 16. I am working on changing resuts over to build 17.
If you use the information in this table, please credit both this site and The National Geographic Society’s Genographic Project.
Sources & Resources
- Behar, D.M., van Oven, M., Rosset, S., Metspalu, M., Loogväli, E.L., Silva, N.M., Kivisild, T., Torroni, A. and Villems, R. (2012). A “Copernican” reassessment of the human mitochondrial DNA tree from its root. American journal of human genetics, 90(4), 675-684.
- Fan, L., & Yao, Y. G. (2011). MitoTool: a web server for the analysis and retrieval of human mitochondrial DNA sequence variations. Mitochondrion, 11(2), 351-356.
- Fan, L., & Yao, Y. G. (2013). An update to MitoTool: using a new scoring system for faster mtDNA haplogroup determination. Mitochondrion, 13(4), 360-363.
- Fernandes, Veronica; Alshamali, Farida; Alves, Marco; Costa, Marta D.; Pereira, Joana B.; Silva, Nuno M.; Cherni, Lotfi; Harich, Nourdin; Cerny, Viktor; Soares, Pedro; Richards, Martin B. & Pereira, Luisa (2012). The Arabian Cradle: Mitochondrial Relicts of the First Steps along the Southern Route out of Africa. American journal of human genetics, 90(2), 347-355.
- Raule, N., Sevini, F., Li, S., Barbieri, A., Tallaro, F., Lomartire, L., Vianello, D., Montesanto, A., Moilanen, J.S., Bezrukov, V. and Blanché, H. (2014). The co-occurrence of mtDNA mutations on different oxidative phosphorylation subunits, not detected by haplogroup analysis, affects human longevity and is population specific. Aging cell, 13(3), 401-407.
- Reidla, M., Kivisild, T., Metspalu, E., Kaldma, K., Tambets, K., Tolk, H.V., Parik, J., Loogväli, E.L., Derenko, M., Malyarchuk, B. and Bermisheva, M. (2003). Origin and Diffusion of mtDNA Haplogroup X. American journal of human genetics, 73(5), 1178-1190.
- Shlush, L.I., Behar, D.M., Yudkovsky, G., Templeton, A., Hadid, Y., Basis, F., Hammer, M., Itzkovitz, S. and Skorecki, K. (2008). The Druze: a population genetic refugium of the Near East. PLoS ONE, 3(5), e2105+.
- Van Oven, M., & Kayser, M. (2009). Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation. Human mutation, 30(2), E386-E394.
- Ian Logan's mtDNA Pages
- Ian Logan's Instructions for mtGenome Genbank Donation
- James Lick's mtDNA Utility
- The FTDNA Haplogroup Project for Haplogroup X
- The Wikipedia Article for Haplogroup X
The following members of the community offer paid consulting for those seeking help with mtDNA results. Inclusion on this list is not a recommendation or endorsement of any service.
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Last Updated: Last updated: November 30, -0001 at 0:00 am