Haplogroup S1a is a branch on the maternal tree of humanity.
mtDNA Haplogroup S1a Phylotree History
Phylotree.org is the maternal (mtDNA) tree of humanity. It is maintained by Dr. Mannis Van Oven. Each build is a major update to the tree. The current build is #17.
|15||S1a||C150g A189G A215G C271g G8251A T8506C C15040T T16172C T16311C!||Released 30 Sep 2012|
|16||S1a||C150g A189G A215G C271g G8251A T8506C C15040T T16172C T16311C!||Released 19 Feb 2014|
|17||S1a||C150g A189G A215G C271g G8251A T8506C C15040T T16172C T16311C!||Released 18 Feb 2016|
mtDNA Haplogroup S1a Data Sources
GenBank is a database of genetic sequence data. It is run by the United States National Institute of Health. It serves as the main repository for mtDNA full sequence profiles. Samples come both from published academic literature and donations from genetic genealogy community members. In addition to GenBank samples, listings below may include other samples published but not submitted to GenBank such as those from the HapMap project.
Note: GenBank results currently use Phylotree build 16. I am working on changing resuts over to build 17.
|Hg ID||Publication||Missing Variants||Additional Variants|
|Hap5012476||Rasmussen et al., 2011||none||S1a:309.1C, 315.1C, 5291, 12397, 15295, 16304, 16519|
|Hap5015457||van Holst Pellekaan et al., 2006||S1a:146, 195||S1a:11, 207, 309.1C, 315.1C, 4008, 9095, 15002, 16519|
|Hap5015458||van Holst Pellekaan et al., 2006||S1a:13105||S1a:199, 207, 309.1C, 315.1C, 1598, 5126, 7705, 8014, 8474, 8542, 13341, 16260, 16399, 16519|
Geno 2.0 Data
Data from Geno 2.0 is derived from the The National Geographic Society’s Genographic Project — the DAR. The Hg ID is specific to this site and is used to protect the identities of those who take part in Genographic research. Birth Country, Mother's Birth Country, and Maternal Grandmother's Birth Country have been normalized from DAR database fields. The Maternal Origin is determined based on the three previous fields.
Note: Geno 2.0 results currently use Phylotree build 16. I am working on changing resuts over to build 17.
If you use the information in this table, please credit both this site and The National Geographic Society’s Genographic Project.
Sources & Resources
- Behar, D.M., van Oven, M., Rosset, S., Metspalu, M., Loogväli, E.L., Silva, N.M., Kivisild, T., Torroni, A. and Villems, R. (2012). A “Copernican” reassessment of the human mitochondrial DNA tree from its root. American journal of human genetics, 90(4), 675-684.
- Fan, L., & Yao, Y. G. (2011). MitoTool: a web server for the analysis and retrieval of human mitochondrial DNA sequence variations. Mitochondrion, 11(2), 351-356.
- Fan, L., & Yao, Y. G. (2013). An update to MitoTool: using a new scoring system for faster mtDNA haplogroup determination. Mitochondrion, 13(4), 360-363.
- Rasmussen, M., Guo, X., Wang, Y., Lohmueller, K.E., Rasmussen, S., Albrechtsen, A., Skotte, L., Lindgreen, S., Metspalu, M., Jombart, T. and Kivisild, T. (2011). An Aboriginal Australian Genome Reveals Separate Human Dispersals into Asia. Science, 334(6052), 94-98.
- van Holst Pellekaan, Sheila M.; Ingman, Max; Roberts-Thomson, June & Harding, Rosalind M. (2006). Mitochondrial genomics identifies major haplogroups in Aboriginal Australians. American Journal of Physical Anthropology, 131(2), 282-294.
- Van Oven, M., & Kayser, M. (2009). Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation. Human mutation, 30(2), E386-E394.
- Ian Logan's mtDNA Pages
- Ian Logan's Instructions for mtGenome Genbank Donation
- James Lick's mtDNA Utility
- The Wikipedia Article for Haplogroup S
The following members of the community offer paid consulting for those seeking help with mtDNA results. Inclusion on this list is not a recommendation or endorsement of any service.
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Last Updated: Last updated: October 14, 2017 at 18:30 pm