Haplogroup F4a2 is a branch on the maternal tree of humanity.
mtDNA Haplogroup F4a2 Phylotree History
Phylotree.org is the maternal (mtDNA) tree of humanity. It is maintained by Dr. Mannis Van Oven. Each build is a major update to the tree. The current build is #17.
|13||F4a2||281 4703 11776 12612 14016 15908||Released 28 Dec 2011; Last Build to use the rCRS|
|14||F4a2||A281G T4703C T11776C A12612G G14016A T15908C||Released 5 Apr 2012; First version to use the RSRS|
|15||F4a2||A281G T11776C A12612G G14016A T15908C||Released 30 Sep 2012|
|16||F4a2||A281G T11776C A12612G G14016A T15908C||Released 19 Feb 2014|
|17||F4a2||A281G T11776C A12612G G14016A T15908C||Released 18 Feb 2016|
mtDNA Haplogroup F4a2 Data Sources
GenBank is a database of genetic sequence data. It is run by the United States National Institute of Health. It serves as the main repository for mtDNA full sequence profiles. Samples come both from published academic literature and donations from genetic genealogy community members. In addition to GenBank samples, listings below may include other samples published but not submitted to GenBank such as those from the HapMap project.
Note: GenBank results currently use Phylotree build 16. I am working on changing resuts over to build 17.
|Hg ID||Origin||Publication||Hg BLD16||Hg BLD17||Hg YFull||Missing Variants||Additional Variants|
|Hap5018186||Liu et al., 2012||F4a2||F4a2*||none||F4a2:152, 185C, 309.1CC, 315.1C, 3010, 4194, 13359, 16519|
|Hap5018279||Liu et al., 2012||F4a2||F4a2*||none||F4a2:152, 185C, 309.1C, 315.1C, 3010, 4194, 13359, 16519|
|Hap5022608||Young et al., 2006||F4a2||F4a2:249d, 5263, 11914, 13928C||F4a2:309.1C, 315.1C, 1555, 4703, 11512, 12007, 14766, 15440, 16179, 16192, 16519|
|Hap5022609||Zheng et al., 2011||F4a2||none||F4a2:523-524d, 4703, 5231, 8839, 16519|
Geno 2.0 Data
Data from Geno 2.0 is derived from the The National Geographic Society’s Genographic Project — the DAR. The Hg ID is specific to this site and is used to protect the identities of those who take part in Genographic research. Birth Country, Mother's Birth Country, and Maternal Grandmother's Birth Country have been normalized from DAR database fields. The Maternal Origin is determined based on the three previous fields.
Note: Geno 2.0 results currently use Phylotree build 16. I am working on changing resuts over to build 17.
If you use the information in this table, please credit both this site and The National Geographic Society’s Genographic Project.
Sources & Resources
- Behar, D.M., van Oven, M., Rosset, S., Metspalu, M., Loogväli, E.L., Silva, N.M., Kivisild, T., Torroni, A. and Villems, R. (2012). A “Copernican” reassessment of the human mitochondrial DNA tree from its root. American journal of human genetics, 90(4), 675-684.
- Fan, L., & Yao, Y. G. (2011). MitoTool: a web server for the analysis and retrieval of human mitochondrial DNA sequence variations. Mitochondrion, 11(2), 351-356.
- Fan, L., & Yao, Y. G. (2013). An update to MitoTool: using a new scoring system for faster mtDNA haplogroup determination. Mitochondrion, 13(4), 360-363.
- Liu, J., Wang, L.D., Sun, Y.B., Li, E.M., Xu, L.Y., Zhang, Y.P., Yao, Y.G. and Kong, Q.P. (2012). Deciphering the Signature of Selective Constraints on Cancerous Mitochondrial Genome. Molecular Biology and Evolution, 29(4), 1255-1261.
- Van Oven, M., & Kayser, M. (2009). Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation. Human mutation, 30(2), E386-E394.
- Young, W.Y., Zhao, L., Qian, Y., Li, R., Chen, J., Yuan, H., Dai, P., Zhai, S., Han, D. and Guan, M.X. (2006). Variants in mitochondrial tRNAGlu, tRNAArg, and tRNAThr may influence the phenotypic manifestation of deafness-associated 12S rRNA A1555G mutation in three Han Chinese families with hearing loss. American Journal of Medical Genetics Part A, 140(20), 2188-2197.
- Zheng, H.X., Yan, S., Qin, Z.D., Wang, Y., Tan, J.Z., Li, H. and Jin, L. (2011). Major Population Expansion of East Asians Began before Neolithic Time: Evidence of mtDNA Genomes. PLoS ONE, 6(10), e25835+.
- Ian Logan’s mtDNA Pages
- Ian Logan’s Instructions for mtGenome Genbank Donation
- James Lick’s mtDNA Utility
- The Wikipedia Article for Haplogroup F
The following members of the community offer paid consulting for those seeking help with mtDNA results. Inclusion on this list is not a recommendation or endorsement of any service.
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Last Updated: Last updated: November 30, -0001 at 0:00 am