Haplogroup R5a1 is a branch on the maternal tree of human kind. Its age is between 10,000 and 24,000 years (Behar et al., 2012b).
mtDNA Haplogroup R5a1 Phylotree History
Phylotree.org is the maternal (mtDNA) tree of humanity. It is maintained by Dr. Mannis Van Oven. Each build is a major update to the tree. The current build is #17.
|01||R5a1||93 200 2833||Released 27 Aug 2008|
|02||R5a1||93 200 2833||Released 14 Oct 2008|
|03||R5a1||93 200 2833||Released 1 Mar 2009|
|05||R5a1||93 200 2833||Released 8 Jul 2009|
|06||R5a1||93 200 2833||Released 28 Sep 2009|
|07||R5a1||93 200 2833||Released 10 Nov 2009|
|08||R5a1||93 200 2833||Released 21 Mar 2010|
|09||R5a1||93 200 2833||Released 20 Jun 2010|
|10||R5a1||93 200 2833||Released 10 Aug 2010|
|11||R5a1||93 200 2833||Released 7 Feb 2011|
|12||R5a1||93 200 2833||Released 20 Jul 2011|
|13||R5a1||93 200 2833||Released 28 Dec 2011; Last Build to use the rCRS|
|14||R5a1||A93G A200G A2833G||Released 5 Apr 2012; First version to use the RSRS|
|15||R5a1||A93G A200G A2833G||Released 30 Sep 2012|
|16||R5a1||A93G A200G A2833G||Released 19 Feb 2014|
|17||R5a1||A93G A200G A2833G||Released 18 Feb 2016|
mtDNA Haplogroup R5a1 Data Sources
GenBank is a database of genetic sequence data. It is run by the United States National Institute of Health. It serves as the main repository for mtDNA full sequence profiles. Samples come both from published academic literature and donations from genetic genealogy community members. In addition to GenBank samples, listings below may include other samples published but not submitted to GenBank such as those from the HapMap project.
Note: GenBank results currently use Phylotree build 16. I am working on changing resuts over to build 17.
|Hg ID||Publication||Missing Variants||Additional Variants|
|Hap5006479||Chaubey et al., 2008||none||R5a1:523-524d, 850, 1709, 4853, 8120, 8279, 11377, 16172|
Geno 2.0 Data
Data from Geno 2.0 is derived from the The National Geographic Society’s Genographic Project — the DAR. The Hg ID is specific to this site and is used to protect the identities of those who take part in Genographic research. Birth Country, Mother's Birth Country, and Maternal Grandmother's Birth Country have been normalized from DAR database fields. The Maternal Origin is determined based on the three previous fields.
Note: Geno 2.0 results currently use Phylotree build 16. I am working on changing resuts over to build 17.
If you use the information in this table, please credit both this site and The National Geographic Society’s Genographic Project.
Sources & Resources
- Behar, D.M., van Oven, M., Rosset, S., Metspalu, M., Loogväli, E.L., Silva, N.M., Kivisild, T., Torroni, A. and Villems, R. (2012). A “Copernican” reassessment of the human mitochondrial DNA tree from its root. American journal of human genetics, 90(4), 675-684.
- Chaubey, G., Karmin, M., Metspalu, E., Metspalu, M., Selvi-Rani, D., Singh, V.K., Parik, J., Solnik, A., Naidu, B.P., Kumar, A. and Adarsh, N. (2008). Phylogeography of mtDNA haplogroup R7 in the Indian peninsula. BMC Evolutionary Biology, 8(1), 1.
- Fan, L., & Yao, Y. G. (2011). MitoTool: a web server for the analysis and retrieval of human mitochondrial DNA sequence variations. Mitochondrion, 11(2), 351-356.
- Fan, L., & Yao, Y. G. (2013). An update to MitoTool: using a new scoring system for faster mtDNA haplogroup determination. Mitochondrion, 13(4), 360-363.
- Van Oven, M., & Kayser, M. (2009). Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation. Human mutation, 30(2), E386-E394.
- Ian Logan’s mtDNA Pages
- Ian Logan’s Instructions for mtGenome Genbank Donation
- James Lick’s mtDNA Utility
- The FTDNA Haplogroup Project for Haplogroup R
- The Wikipedia Article for Haplogroup R
The following members of the community offer paid consulting for those seeking help with mtDNA results. Inclusion on this list is not a recommendation or endorsement of any service.
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Last Updated: Last updated: November 30, -0001 at 0:00 am