Haplogroup J1c5d is a branch on the maternal tree of human kind. Its age is between 2,800 and 9,200 years (Behar et al., 2012b).
mtDNA Haplogroup J1c5d Phylotree History
Phylotree.org is the maternal (mtDNA) tree of humanity. It is maintained by Dr. Mannis Van Oven. Each build is a major update to the tree. The current build is #17.
|13||J1c5d||4688 13434||Released 28 Dec 2011; Last Build to use the rCRS|
|14||J1c5d||T4688C A13434G||Released 5 Apr 2012; First version to use the RSRS|
|15||J1c5d||T4688C A13434G||Released 30 Sep 2012|
|16||J1c5d||T4688C A13434G||Released 19 Feb 2014|
|17||J1c5d||T4688C A13434G||Released 18 Feb 2016|
mtDNA Haplogroup J1c5d Data Sources
GenBank is a database of genetic sequence data. It is run by the United States National Institute of Health. It serves as the main repository for mtDNA full sequence profiles. Samples come both from published academic literature and donations from genetic genealogy community members. In addition to GenBank samples, listings below may include other samples published but not submitted to GenBank such as those from the HapMap project.
Note: GenBank results currently use Phylotree build 16. I am working on changing results over to build 17.
|Hg ID||Origin||Publication||Hg BLD16||Hg BLD17||Hg YFull||Missing Variants||Additional Variants|
|Hap5001559||Behar et al., 2012b||J1c5d||J1c5d||none||J1c5d:188, 309.1C, 315.1C, 523-524d, 8255, 10237Y, 16192Y, 16519|
|Hap5006595||Coble et al., 2004||J1c5d||J1c5d||none||J1c5d:309.1C, 315.1C, 523-524d, 5978, 7340, 7888, 16519|
|Hap5008018||-||Greenspan et al., 2006 - 2016||J1c5d||-||none||J1c5d:188, 309.1C, 315.1C, 523-524d, 8255, 16519|
|Hap5012286||Pope et al., 2011||J1c5d||J1c5d||J1c5d:146||J1c5d:309.1C, 523-524d, 16519|
Sources & Resources
- Behar, D.M., van Oven, M., Rosset, S., Metspalu, M., Loogväli, E.L., Silva, N.M., Kivisild, T., Torroni, A. and Villems, R. (2012). A “Copernican” reassessment of the human mitochondrial DNA tree from its root. American journal of human genetics, 90(4), 675-684.
- Coble, M.D., Just,R.S., O'Callaghan, J.E., Letmanyi, I.H., Peterson,C.T., Irwin,J.A. and Parsons,T.J. (2004). Single nucleotide polymorphisms over the entire mtDNA genome that increase the power of forensic testing in Caucasians. International journal of legal medicine, (3),, 137-146.
- Fan, L., & Yao, Y. G. (2011). MitoTool: a web server for the analysis and retrieval of human mitochondrial DNA sequence variations. Mitochondrion, 11(2), 351-356.
- Fan, L., & Yao, Y. G. (2013). An update to MitoTool: using a new scoring system for faster mtDNA haplogroup determination. Mitochondrion, 13(4), 360-363.
- FamilyTreeDNA & Greenspan (2006). Sequences Directly Submited by FamilyTreeDNA on Customers’ Behalf. , -, -.
- Pope, A. M., Carr, S. M., Smith, K. N., & Marshall, H. D. (2011). Mitogenomic and microsatellite variation in descendants of the founder population of Newfoundland: high genetic diversity in an historically isolated population. Genome, 54(2), 110-119.
- Van Oven, M., & Kayser, M. (2009). Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation. Human mutation, 30(2), E386-E394.
- Ian Logan’s mtDNA Pages
- Ian Logan’s Instructions for mtGenome Genbank Donation
- James Lick’s mtDNA Utility
- The FTDNA Haplogroup Project for Haplogroup J
- The Wikipedia Article for Haplogroup J
The following members of the community offer paid consulting for those seeking help with mtDNA results. Inclusion on this list is not a recommendation or endorsement of any service.
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