Haplogroup B5a1c1 is a branch on the maternal tree of humanity.
mtDNA Haplogroup B5a1c1 Phylotree History
Phylotree.org is the maternal (mtDNA) tree of humanity. It is maintained by Dr. Mannis Van Oven. Each build is a major update to the tree. The current build is #17.
|13||B5a1c1||593 5237 10523||Released 28 Dec 2011; Last Build to use the rCRS|
|14||B5a1c1||T593C G5237A A10523G||Released 5 Apr 2012; First version to use the RSRS|
|15||B5a1c1||T593C G5237A A10523G||Released 30 Sep 2012|
|16||B5a1c1||T593C G5237A A10523G||Released 19 Feb 2014|
|17||B5a1c1||A10523G||Released 18 Feb 2016|
mtDNA Haplogroup B5a1c1 Data Sources
GenBank is a database of genetic sequence data. It is run by the United States National Institute of Health. It serves as the main repository for mtDNA full sequence profiles. Samples come both from published academic literature and donations from genetic genealogy community members. In addition to GenBank samples, listings below may include other samples published but not submitted to GenBank such as those from the HapMap project.
Note: GenBank results currently use Phylotree build 16. I am working on changing results over to build 17.
|Hg ID||Origin||Publication||Hg BLD16||Hg BLD17||Hg YFull||Missing Variants||Additional Variants|
|Hap5011259||Ko et al., 2014||B5a1c1||B5a1c1a*||B5a1c1:8281-8289d, 16129||B5a1c1:11194, 16129N, 16189|
|Hap5015557||Zhang AM et al., 2011||B5a1c1||B5a1c1a1*||none||B5a1c1:64, 309.1C, 315.1C, 523-524d, 11778, 16183C, 16262|
|Hap5015558||Zhang AM et al., 2011||B5a1c1||B5a1c1a1*||none||B5a1c1:309.1C, 315.1C, 523-524d, 11778, 16183C, 16262|
|Hap5018831||Zhang W and Yao 2014||B5a1c1||B5a1c1a*||none||B5a1c1:309.1C, 315.1C, 523-524d, 16183C|
|Hap5018834||Zhang W and Yao 2014||B5a1c1||B5a1c1a*||none||B5a1c1:309.1CC, 315.1C, 501, 523-524d, 16182C, 16183C|
|Hap5022408||Zheng et al., 2011||B5a1c1||none||B5a1c1:64, 315.1C, 523-524d, 9371, 11908, 14894, 16183C, 16262|
|Hap5022409||Zheng et al., 2011||B5a1c1||none||B5a1c1:64, 523-524d, 9371, 11908, 14894, 16183C, 16262|
|Hap5022410||Zheng et al., 2011||B5a1c1||none||B5a1c1:523-524d, 16182C, 16183C|
|Hap5022411||Zheng et al., 2011||B5a1c1||none||B5a1c1:523-524d, 750N, 5471, 5964, 16183N, 16262|
Sources & Resources
- Behar, D.M., van Oven, M., Rosset, S., Metspalu, M., Loogväli, E.L., Silva, N.M., Kivisild, T., Torroni, A. and Villems, R. (2012). A “Copernican” reassessment of the human mitochondrial DNA tree from its root. American journal of human genetics, 90(4), 675-684.
- Fan, L., & Yao, Y. G. (2011). MitoTool: a web server for the analysis and retrieval of human mitochondrial DNA sequence variations. Mitochondrion, 11(2), 351-356.
- Fan, L., & Yao, Y. G. (2013). An update to MitoTool: using a new scoring system for faster mtDNA haplogroup determination. Mitochondrion, 13(4), 360-363.
- Ko, A.M.S., Chen, C.Y., Fu, Q., Delfin, F., Li, M., Chiu, H.L., Stoneking, M. and Ko, Y.C. (2014). Early Austronesians: Into and Out Of Taiwan. American journal of human genetics, 94(3), 426-436.
- Van Oven, M., & Kayser, M. (2009). Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation. Human mutation, 30(2), E386-E394.
- Zhang, A.M., Bandelt, H.J., Jia, X., Zhang, W., Li, S., Yu, D., Wang, D., Zhuang, X.Y., Zhang, Q. and Yao, Y.G. (2011). Is Mitochondrial tRNAphe Variant m.593T>C a Synergistically Pathogenic Mutation in Chinese LHON Families with m.11778G>A?. PLoS ONE, 6(10), e26511.
- Zhang W and Yao (2014). A Direct Submission to GenBank by Zhang W and Yao 2014. , unpublished, unpublished.
- Zheng, H.X., Yan, S., Qin, Z.D., Wang, Y., Tan, J.Z., Li, H. and Jin, L. (2011). Major Population Expansion of East Asians Began before Neolithic Time: Evidence of mtDNA Genomes. PLoS ONE, 6(10), e25835+.
- Ian Logan’s mtDNA Pages
- Ian Logan’s Instructions for mtGenome Genbank Donation
- James Lick’s mtDNA Utility
- The FTDNA Haplogroup Project for Haplogroup B
- The Wikipedia Article for Haplogroup B
The following members of the community offer paid consulting for those seeking help with mtDNA results. Inclusion on this list is not a recommendation or endorsement of any service.
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