Haplogroup A3a is a Japanese branch on the maternal tree of humanity. Although its age has not been determined, it must be younger than its parent that was born between 2,200 and 11,300 years ago (Behar et al 2012b).
Available information on the line comes from three publications. Branch members in all three studies are from Japan.
There are members of this lineage in the Geno 2 dataset, but they have not entered their maternal origins information.
mtDNA Haplogroup A3a Phylotree History
Phylotree.org is the maternal (mtDNA) tree of humanity. It is maintained by Dr. Mannis Van Oven. Each build is a major update to the tree. The current build is #17.
|16||A3a||A13140G||Released 19 Feb 2014|
|17||A3a||A13140G||Released 18 Feb 2016|
mtDNA Haplogroup A3a Data Sources
GenBank is a database of genetic sequence data. It is run by the United States National Institute of Health. It serves as the main repository for mtDNA full sequence profiles. Samples come both from published academic literature and donations from genetic genealogy community members. In addition to GenBank samples, listings below may include other samples published but not submitted to GenBank such as those from the HapMap project.
Note: GenBank results currently use Phylotree build 16. I am working on changing resuts over to build 17.
|Hg ID||Publication||Missing Variants||Additional Variants|
|Hap5011991||Mikami et al., 2013||A3a:16311||A3a:309.1C, 315.1C, 523-524d, 2755|
|Hap5012010||Mikami et al., 2013||none||A3a:309.1C, 315.1C, 523-524d, 9477|
|Hap5015064||Tanaka et al., 2004||none||A3a:315.1C, 523-524d, 13737, 15286|
|Hap5022291||Zheng et al., 2011||A3a:1736||A3a:499, 523-524d, 9148, 12771|
Geno 2.0 Data
Data from Geno 2.0 is derived from the The National Geographic Society’s Genographic Project — the DAR. The Hg ID is specific to this site and is used to protect the identities of those who take part in Genographic research. Birth Country, Mother's Birth Country, and Maternal Grandmother's Birth Country have been normalized from DAR database fields. The Maternal Origin is determined based on the three previous fields.
Note: Geno 2.0 results currently use Phylotree build 16. I am working on changing resuts over to build 17.
If you use the information in this table, please credit both this site and The National Geographic Society’s Genographic Project.
Sources & Resources
- Behar, D.M., van Oven, M., Rosset, S., Metspalu, M., Loogväli, E.L., Silva, N.M., Kivisild, T., Torroni, A. and Villems, R. (2012). A “Copernican” reassessment of the human mitochondrial DNA tree from its root. American journal of human genetics, 90(4), 675-684.
- Fan, L., & Yao, Y. G. (2011). MitoTool: a web server for the analysis and retrieval of human mitochondrial DNA sequence variations. Mitochondrion, 11(2), 351-356.
- Fan, L., & Yao, Y. G. (2013). An update to MitoTool: using a new scoring system for faster mtDNA haplogroup determination. Mitochondrion, 13(4), 360-363.
- Mikami, E., Fuku, N., Kong, Q.P., Takahashi, H., Ohiwa, N., Murakami, H., Miyachi, M., Higuchi, M., Tanaka, M., Pitsiladis, Y.P. and Kawahara, T. (2013). Comprehensive analysis of common and rare mitochondrial DNA variants in elite Japanese athletes: a case–control study. Journal of human genetics, 58(12), 780-787.
- Tanaka, M., Cabrera, V.M., González, A.M., Larruga, J.M., Takeyasu, T., Fuku, N., Guo, L.J., Hirose, R., Fujita, Y., Kurata, M. & Shinoda, K.I. (2004). Mitochondrial Genome Variation in Eastern Asia and the Peopling of Japan. Genome Research, 14(10a), 1832-1850.
- Van Oven, M., & Kayser, M. (2009). Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation. Human mutation, 30(2), E386-E394.
- Zheng, H.X., Yan, S., Qin, Z.D., Wang, Y., Tan, J.Z., Li, H. and Jin, L. (2011). Major Population Expansion of East Asians Began before Neolithic Time: Evidence of mtDNA Genomes. PLoS ONE, 6(10), e25835+.
- Ian Logan's mtDNA Pages
- Ian Logan's Instructions for mtGenome Genbank Donation
- James Lick's mtDNA Utility
- The FTDNA Haplogroup Project for Haplogroup A2
- The Wikipedia Article for Haplogroup A
The following members of the community offer paid consulting for those seeking help with mtDNA results. Inclusion on this list is not a recommendation or endorsement of any service.
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Last Updated: Last updated: August 13, 2016 at 20:27 pm