Haplogroup L3h1a2a1 is a branch on the maternal tree of humanity.
mtDNA Haplogroup L3h1a2a1 Phylotree History
Phylotree.org is the maternal (mtDNA) tree of humanity. It is maintained by Dr. Mannis Van Oven. Each build is a major update to the tree. The current build is #17.
|15||L3h1a2a1||G12236A C14862T||Released 30 Sep 2012|
|16||L3h1a2a1||G12236A C14862T||Released 19 Feb 2014|
|17||L3h1a2a1||G12236A C14862T||Released 18 Feb 2016|
mtDNA Haplogroup L3h1a2a1 Data Sources
GenBank is a database of genetic sequence data. It is run by the United States National Institute of Health. It serves as the main repository for mtDNA full sequence profiles. Samples come both from published academic literature and donations from genetic genealogy community members. In addition to GenBank samples, listings below may include other samples published but not submitted to GenBank such as those from the HapMap project.
Note: GenBank results currently use Phylotree build 16. I am working on changing resuts over to build 17.
|Hg ID||Origin||Publication||Hg BLD16||Hg BLD17||Hg YFull||Missing Variants||Additional Variants|
|Hap5000400||Behar et al., 2008a||L3h1a2a1||L3h1a2a1*||L3h1a2a1:152||L3h1a2a1:315.1C, 523-524d, 5090, 12014, 14908, 16148, 16192, 16234, 16519|
|Hap5000571||Behar et al., 2008b||L3h1a2a1||L3h1a2a1a*||none||L3h1a2a1:315.1C, 3106N, 3808, 5108, 5147, 16165, 16192|
|Hap5010135||Ingman et al., 2000||L3h1a2a1||L3h1a2a1*||none||L3h1a2a1:291, 315.1C, 5004, 7058A, 7858, 10197, 11377, 12999, 16519|
|Hap5018419||Sudan||Soares et al., 2012||L3h1a2a1||L3h1a2a1a1||none||L3h1a2a1:315.1C, 723, 3290, 5108, 16165, 16177, 16178, 16192, 16519|
|Hap5023358||Zheng et al., 2012||L3h1a2a1||L3h1a2a1:152||L3h1a2a1:1597, 6023, 11512, 16148, 16519|
|Hap5023359||Zheng et al., 2012||L3h1a2a1||none||L3h1a2a1:315.1C, 9327, 9554, 10586, 15119, 16172, 16192, 16519|
Geno 2.0 Data
Data from Geno 2.0 is derived from the The National Geographic Society’s Genographic Project — the DAR. The Hg ID is specific to this site and is used to protect the identities of those who take part in Genographic research. Birth Country, Mother's Birth Country, and Maternal Grandmother's Birth Country have been normalized from DAR database fields. The Maternal Origin is determined based on the three previous fields.
Note: Geno 2.0 results currently use Phylotree build 16. I am working on changing resuts over to build 17.
If you use the information in this table, please credit both this site and The National Geographic Society’s Genographic Project.
Sources & Resources
- Behar, D.M., Metspalu, E., Kivisild, T., Rosset, S., Tzur, S., Hadid, Y., Yudkovsky, G., Rosengarten, D., Pereira, L., Amorim, A. and Kutuev, I. (2008). Counting the Founders: The Matrilineal Genetic Ancestry of the Jewish Diaspora. PLoS ONE, 3(4), e2062+.
- Behar, Doron M.; Villems, Richard; Soodyall, Himla; Blue-Smith, Jason; Pereira, Luisa; Metspalu, Ene; Scozzari, Rosaria; Makkan, Heeran; Tzur, Shay; Comas, David; Bertranpetit, Jaume; Quintana-Murci, Lluis; Tyler-Smith, Chris; Wells, R. Spencer & Rosset, (2008). The Dawn of Human Matrilineal Diversity. American journal of human genetics, 82(5), 1130-1140.
- Behar, D.M., van Oven, M., Rosset, S., Metspalu, M., Loogväli, E.L., Silva, N.M., Kivisild, T., Torroni, A. and Villems, R. (2012). A “Copernican” reassessment of the human mitochondrial DNA tree from its root. American journal of human genetics, 90(4), 675-684.
- Fan, L., & Yao, Y. G. (2011). MitoTool: a web server for the analysis and retrieval of human mitochondrial DNA sequence variations. Mitochondrion, 11(2), 351-356.
- Fan, L., & Yao, Y. G. (2013). An update to MitoTool: using a new scoring system for faster mtDNA haplogroup determination. Mitochondrion, 13(4), 360-363.
- Ingman, M., Kaessmann, H., Pääbo, S., & Gyllensten, U. (2000). Mitochondrial genome variation and the origin of modern humans. Nature, 408(6813), 708-713.
- Soares, Pedro; Alshamali, Farida; Pereira, Joana B.; Fernandes, Veronica; Silva, Nuno M.; Afonso, Carla; Costa, Marta D.; Musilova, Eliska; Macaulay, Vincent; Richards, Martin B.; vCerny, Viktor & Pereira, Luisa (2012). The Expansion of mtDNA Haplogroup L3 within and out of Africa. Molecular Biology and Evolution, 29(3), 915-927.
- Van Oven, M., & Kayser, M. (2009). Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation. Human mutation, 30(2), E386-E394.
- Zheng, H. X., Yan, S., Qin, Z. D., & Jin, L. (2012). MtDNA analysis of global populations support that major population expansions began before Neolithic Time. Nature Scientific Reports, 2, -.
- Ian Logan’s mtDNA Pages
- Ian Logan’s Instructions for mtGenome Genbank Donation
- James Lick’s mtDNA Utility
- The FTDNA Haplogroup Project for Haplogroup L3
- The Wikipedia Article for Haplogroup L3
The following members of the community offer paid consulting for those seeking help with mtDNA results. Inclusion on this list is not a recommendation or endorsement of any service.
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Last Updated: Last updated: November 30, -0001 at 0:00 am