Haplogroup L3d1a1a1 is a branch on the maternal tree of humanity.
mtDNA Haplogroup L3d1a1a1 Phylotree History
Phylotree.org is the maternal (mtDNA) tree of humanity. It is maintained by Dr. Mannis Van Oven. Each build is a major update to the tree. The current build is #17.
|16||L3d1a1a1||A3579G||Released 19 Feb 2014|
|17||L3d1a1a1||A3579G||Released 18 Feb 2016|
mtDNA Haplogroup L3d1a1a1 Data Sources
GenBank is a database of genetic sequence data. It is run by the United States National Institute of Health. It serves as the main repository for mtDNA full sequence profiles. Samples come both from published academic literature and donations from genetic genealogy community members. In addition to GenBank samples, listings below may include other samples published but not submitted to GenBank such as those from the HapMap project.
Note: GenBank results currently use Phylotree build 16. I am working on changing results over to build 17.
|Hg ID||Origin||Publication||Hg BLD16||Hg BLD17||Hg YFull||Missing Variants||Additional Variants|
|Hap5000705||Behar et al., 2008b||L3d1a1a1||L3d1a1a1||none||L3d1a1a1:309.1C, 315.1C, 523-524d, 3106N, 13651, 16212, 16519|
|Hap5009237||Gonder et al., 2006||L3d1a1a1||L3d1a1a1||none||L3d1a1a1:309.1C, 315.1C, 345, 523-524d, 2607, 7337, 12065, 12106A, 13311, 16468, 16519|
|Hap5015392||South Africa||van der Walt et al. 2012||L3d1a1a1||L3d1a1a1||none||L3d1a1a1:309.1C, 523-524d, 16519|
|Hap5023255||Zheng et al., 2012||L3d1a1a1||L3d1a1a1:16124||L3d1a1a1:291d, 523-524d, 16519|
Sources & Resources
- Behar, Doron M.; Villems, Richard; Soodyall, Himla; Blue-Smith, Jason; Pereira, Luisa; Metspalu, Ene; Scozzari, Rosaria; Makkan, Heeran; Tzur, Shay; Comas, David; Bertranpetit, Jaume; Quintana-Murci, Lluis; Tyler-Smith, Chris; Wells, R. Spencer & Rosset, (2008). The Dawn of Human Matrilineal Diversity. American journal of human genetics, 82(5), 1130-1140.
- Behar, D.M., van Oven, M., Rosset, S., Metspalu, M., Loogväli, E.L., Silva, N.M., Kivisild, T., Torroni, A. and Villems, R. (2012). A “Copernican” reassessment of the human mitochondrial DNA tree from its root. American journal of human genetics, 90(4), 675-684.
- Fan, L., & Yao, Y. G. (2011). MitoTool: a web server for the analysis and retrieval of human mitochondrial DNA sequence variations. Mitochondrion, 11(2), 351-356.
- Fan, L., & Yao, Y. G. (2013). An update to MitoTool: using a new scoring system for faster mtDNA haplogroup determination. Mitochondrion, 13(4), 360-363.
- Gonder, M.K., Mortensen, H.M., Reed, F.A., de Sousa, A. and Tishkoff, S.A. (2006). Whole-mtDNA Genome Sequence Analysis of Ancient African Lineages. Nature Communications, 24(3), 757-768.
- Van der Walt, E.M., Smuts, I., Taylor, R.W., Elson, J.L., Turnbull, D.M., Louw, R. and van der Westhuizen, F.H. (2012). Characterization of mtDNA variation in a cohort of South African paediatric patients with mitochondrial disease. European Journal of Human Genetics, 20(6), 650-656.
- Van Oven, M., & Kayser, M. (2009). Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation. Human mutation, 30(2), E386-E394.
- Zheng, H. X., Yan, S., Qin, Z. D., & Jin, L. (2012). MtDNA analysis of global populations support that major population expansions began before Neolithic Time. Nature Scientific Reports, 2, -.
- Ian Logan’s mtDNA Pages
- Ian Logan’s Instructions for mtGenome Genbank Donation
- James Lick’s mtDNA Utility
- The FTDNA Haplogroup Project for Haplogroup L3
- The Wikipedia Article for Haplogroup L3
The following members of the community offer paid consulting for those seeking help with mtDNA results. Inclusion on this list is not a recommendation or endorsement of any service.
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