Sample Details for Hap5006649

ID

Hg ID: Hap5006649, GenBank ID: AY495258.1

Haplogroup

Phylotree BLD 16: K1a3a1b, Phylotree BLD 17: , YFull: K1a3a1b1

Publication

Published in: Coble et al., 2004 | Coble, M.D., Just,R.S., O'Callaghan, J.E., Letmanyi, I.H., Peterson,C.T., Irwin,J.A. and Parsons,T.J. (2004). Single nucleotide polymorphisms over the entire mtDNA genome that increase the power of forensic testing in Caucasians. International journal of legal medicine, (3),, 137-146.

We have sequenced the entire mtDNA genome (mtGenome) of 241 individuals who match 1 of 18 common European Caucasian HV1/HV2 types, to identify sites that permit additional forensic discrimination. We found that over the entire mtGenome even individuals with the same HV1/HV2 type rarely match. Restricting attention to sites that are neutral with respect to phenotypic expression, we have selected eight panels of single nucleotide polymorphism (SNP) sites that are useful for additional discrimination. These panels were selected to be suitable for multiplex SNP typing assays, with 7-11 sites per panel.

Sample source link: http://www.ncbi.nlm.nih.gov/nuccore/AY495258.1

Origin:

Publication Notes: K2-07

Results Profile

RSRS Haplotype:

146, 152, 195, 247, 309.1C, 315.1C, 497, 524.1AC, 769, 825T, 1018, 1189, 1811, 2758, 2885, 3480, 3594, 4104, 4312, 7146, 7256, 7521, 7559, 8440, 8468, 8522, 8655, 8701, 9055, 9540, 9698, 10550, 10664, 10688, 10810, 10873, 10915, 11151, 11299, 11467, 11914, 12308, 12372, 12705, 13105, 13117, 13276, 13506, 13650, 14167, 14798, 16093, 16129, 16187, 16189, 16223, 16224, 16230, 16278

rCRS Haplotype:

Coming soon…

FASTA Profile:


Phylotree Build 17 Analysis

Missing Variants: none

Additional Variants: K1a3a1b:309.1C, 315.1C, 524.1AC, 11151


Last Updated: 2016/06/29 10:51:00 PM

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