Sample Details for Hap5005185

ID

Hg ID: Hap5005185, GenBank ID: JQ705827.1

Haplogroup

Phylotree BLD 16: C5c1a, Phylotree BLD 17: , YFull: C5c1a

Publication

Published in: Behar et al., 2012b | Behar, D.M., van Oven, M., Rosset, S., Metspalu, M., Loogväli, E.L., Silva, N.M., Kivisild, T., Torroni, A. and Villems, R. (2012). A “Copernican” reassessment of the human mitochondrial DNA tree from its root. American journal of human genetics, 90(4), 675-684.

Mutational events along the human mtDNA phylogeny are traditionally identified relative to the revised Cambridge Reference Sequence, a contemporary European sequence published in 1981. This historical choice is a continuous source of inconsistencies, misinterpretations, and errors in medical, forensic, and population genetic studies. Here, after having refined the human mtDNA phylogeny to an unprecedented level by adding information from 8,216 modern mitogenomes, we propose switching the reference to a Reconstructed Sapiens Reference Sequence, which was identified by considering all available mitogenomes from Homo neanderthalensis.

Sample source link: http://www.ncbi.nlm.nih.gov/nuccore/JQ705827.1

Origin:

Publication Notes: 9308

Results Profile

RSRS Haplotype:

146, 195, 247, 249d, 315.1C, 489, 595.1C, 769, 825T, 1018, 1670T, 2758, 2885, 3552A, 3594, 4104, 4312, 4715, 7146, 7196A, 7256, 7521, 7694, 8468, 8584, 8655, 9545, 10400, 10454, 10664, 10688, 10810, 10915, 13105, 13263, 13276, 13506, 13650, 14318, 14783, 15043, 15301, 15487T, 16093, 16129, 16187, 16189, 16230, 16234, 16278, 16288, 16293R, 16298, 16311, 16327, 16518T, 16527

rCRS Haplotype:

Coming soon…

FASTA Profile:


Phylotree Build 17 Analysis

Missing Variants: C5c1a:152

Additional Variants: C5c1a:315.1C, 16293R


Last Updated: 2016/06/29 10:51:00 PM

you're currently offline